2013
: a search engine independent MD-score2012
Marcus Schmidt, Birte Hellwig, Seddik Hammad, Amnah Othman, Miriam Lohr, Zonglin Chen, Daniel Boehm, Susanne Gebhard, Ilka Petry, Antje Lebrecht, Cristina Cadenas, Rosemarie Marchan, Joanna D. Stewart, Christine Solbach, Lars Holmberg, Karolina Edlund, Hanna Göransson Kultima, Achim Rody, Anders Berglund, Mats Lambe, Anders Isaksson, Johan Botling, Thomas Karn, Volkmar Müller, Aslihan Gerhold-Ay, Christina Cotarelo, Martin Sebastian, Ralf Kronenwett, Hans Bojar, Hans-Anton Lehr, Ugur Sahin, Heinz Koelbl, Mathias Gehrmann, Patrick Micke, Jörg Rahnenführer, Jan G. Hengstler
A comprehensive analysis of human gene expression profiles identifies stromal immunoglobulin kappa C as a compatible prognostic marker in human solid tumors
Clinical Cancer Research 18(9):2695-2703, 2012
(Abstract on journal homepage)
Cristina Cadenas, Sonja Vosbeck, Eva-Maria Hein, Birte Hellwig, Alice Langer, Heiko Hayen, Dennis Franckenstein, Bettina Büttner, Seddik Hammad, Rosemarie Marchan, Matthias Hermes, Silvia Selinski, Jörg Rahnenführer, Begüm Peksel, Zsolt Török, László Vígh, Jan G. Hengstler
Glycerophospholipid profile in oncogene-induced senescence
Biochim Biophys Acta 1821(9):1256-1268, 2012
(Abstract on journal homepage)
2011
Kai Kammers, Michel Lang, Jan G Hengstler, Marcus Schmidt, Jörg Rahnenführer
Survival models with preclustered gene groups as covariates
BMC Bioinformatics 12:478, 2011
(Full free text on journal homepage)
Matuschek C, Rudoy M, Peiper M, Gerber PA, Hoff NP, Buhren BA, Flehmig B, Budach W, Knoefel WT, Bojar H, Prisack HB, Steinbach G, Shukla V, Schwarz A, Kammers K, Erhardt A, Scherer A, Bölke E, Schauer M
Do insulin-like growth factor associated proteins qualify as a tumor marker? Results of a prospective study in 163 cancer patients
Eur J Med Res. 16(10):451-6, 2011
(Full free text on journal homepage)
Steffi Urbschat, Jörg Rahnenführer, Wolfram Henn, Wolfgang Feiden, Silke Wemmert, Stefan Linsler, Klaus D. Zang, Joachim Oertel, Ralf Ketter
Clonal cytogenetic progression within intratumorally heterogeneous meningiomas predicts tumor recurrence
International Journal of Oncology 39(6):1601-1608, 2011
(Abstract at journal homepage)
Sven Nahnsen, Andreas Bertsch, Jörg Rahnenführer, Alfred Nordheim, Oliver Kohlbacher
Probabilistic Consensus Scoring Improves Tandem Mass Spectrometry Peptide Identification
Journal of Proteome Research 10(8):3332-2243, 2011
(Full free text on journal homepage)
Christian Netzer, Jörg Rahnenführer
Sample Size Calculations for Cancer Progression Models
International Journal of Computational Bioscience, accepted, 2011
Frank Dondelinger, Andre Aderhold, Sophie Lebre, Marco Grzegorczyk, Dirk Husmeier
A Bayesian regression multiple changepoints model for systems biology
In D. Conesa et al. (Eds.): Proceedings of the 26th International Workshop on Statistical Modelling (IWSM2011) Copiformes, S.L., 2011
(Abstract on journal homepage)
Dirk Husmeier, Adriano V. Werhli, Marco Grzegorczyk
Advanced Applications of Bayesian networks in Systems Biology
In D.J. Balding et al. (Eds.): Handbook of Statistical Systems Biology Wiley, Winchester, ISBN 978-0470710869, 2011
Marco Grzegorczyk, Dirk Husmeier
Improvements in the reconstruction of time-varying gene regulatory networks: dynamic programming and regularization by information sharing among genes
Bioinformatics 27(5):693-699, 2011
(Full free text on journal homepage)
Marco Grzegorczyk, Dirk Husmeier
Non-homogeneous dynamic Bayesian networks for continuous data
Machine Learning 83(3):355-419, 2011
(Abstract on journal homepage)
Marco Grzegorczyk, Dirk Husmeier, Jörg Rahnenführer
Modelling non-stationary dynamic gene regulatory processes with the BGM model
Computational Statistics 26(2):199-218, 2011
(Abstract on journal homepage)
Marcus Schmidt, Ilka B. Petry, Daniel Böhm, Antje Lebrecht, Christian von Törne, Susanne Gebhard, Aslihan Gerhold-Ay, Christina Cotarelo, Marco Battista, Wiebke Schormann, Evgenia Freis, Silvia Selinski, Katja Ickstadt, Jörg Rahnenführer, Martin Sebastian, Martin Schuler, Heinz Koelbl, Mathias Gehrmann, Jan G. Hengstler
Ep-CAM RNA Expression Predicts Metastasis-Free Survival in Three Cohorts of Untreated Node-Negative Breast Cancer
Breast Cancer Research and Treatment 125(3):637-46, 2011
(Abstract on journal homepage)
Ruth-Jessica Karlowatz, Jürgen Scharhag, Jörg Rahnenführer, Ulrich Schneider, Ernst Jakob, Wilfried Kindermann, Klaus Dieter Zang
Polymorphisms in the IGF1 Signalling Pathway Including the Myostatin Gene Are Associated with Left Ventricular Mass in Male Athletes
British Journal of Sports Medicine 45(1):36-41, 2011
(Abstract at journal homepage)
2010
Wolfgang A. Schulz, Marc Ingenwerth, Carolle E Djuidje, Christiane Hader, Jörg Rahnenführer, Rainer Engers
Changes in cortical cytoskeletal and extracellular matrix gene expression in prostate cancer are related to oncogenic ERG deregulation
BMC Cancer 10(1):505, 2010
(Full free text on journal homepage)
Kai Kammers, Jörg Rahnenführer
Improved Interpretability of Survival Models with Gene Groups as Covariates
Technical Report 2/2010, TU Dortmund, Department of Statistics, 2010
Cristina Cadenas, Dennis Franckenstein, Marcus Schmidt, Mathias Gehrmann, Matthias Hermes, Bettina Geppert, Wiebke Schormann, Lindsey J. Maccoux, Markus Schug, Anika Schumann, Christian Wilhelm, Evgenia Freis, Katja Ickstadt, Jörg Rahnenführer, Jörg I. Baumbach, Albert Sickmann, and Jan G. Hengstler
Role of thioredoxin reductase 1 and thioredoxin interacting protein in prognosis of breast cancer
Breast Cancer Research 12(3):R44, 2010
(Full free text on journal homepage)
Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher
YLoc - an interpretable web server for predicting subcellular localization
Nucleic Acids Research 38(Web Server issue):W497-W502, 2010
(Full free text on journal homepage)
Marco Grzegorczyk
An introduction to Gaussian Bayesian networks
In Yan Qing (Ed.): Systems Biology in Drug Discovery and Development (Springer Series: Methods in Molecular Biology, Vol. 662). Humana Press. ISBN 978-1-60761-799-0, 2010
Miriam Lohr, Patricio Godoy, Jan G. Hengstler, Jörg Rahnenführer, Marco Grzegorczyk
Extracting differential regulatory sub-networks from genome-wide microarray expression data
In: T. Manninen et al. (eds.): Proceedings of the Seventh International Workshop on Computational Systems Biology, 63-66, WCSB 2010, Luxembourg, 2010
Marco Grzegorczyk, Dirk Husmeier, Jörg Rahnenführer
Modelling non-stationary gene regulatory processes
Advances in Bioinformatics, Article ID 749848, doi:10.1155/2010/749848, 2010
(Full free text on journal homepage)
Birte Hellwig, Jan G. Hengstler, Marcus Schmidt, Mathias C. Gehrmann, Wiebke Schormann, Jörg Rahnenführer
Comparison of scores for bimodality of gene expression distributions and genome-wide evaluation of the prognostic relevance of high-scoring genes
BMC Bioinformatics 11:276, 2010
(Full free text on journal homepage)
Katharina Podwojski, Martin Eisenacher, Michael Kohl, Michael Turewicz, Helmut E. Meyer, Jörg Rahnenführer, Christian Stephan
Peek a peak: a glance at statistics for quantitative label-free proteomics
Expert Review of Proteomics 7(2):249-261, 2010
(Abstract on journal homepage)
Jan C. Brase, Marcus Schmidt, Thomas Fischbach, Holger Sültmann, Hans Bojar, Heinz Koelbl, Birte Hellwig, Jörg Rahnenführer, Jan G. Hengstler, Mathias C. Gehrmann
ERBB2 and TOP2A in breast cancer: A comprehensive analysis of gene amplification, RNA levels, and protein expression and their influence on prognosis and prediction
Clinical Cancer Research 16(8):2391-2401, 2010
(Abstract on journal homepage)
Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher
Going from where to why - interpretable prediction of protein subcellular localization
Bioinformatics 26(9): 1232-1238, 2010
Samuel E. Wuest, Kitty Vijverberg, Anja Schmidt, Manuel Weiss, Jacqueline Gheyselinck, Miriam Lohr, Frank Wellmer, Jörg Rahnenführer, Christian von Mering, Ueli Grossniklaus
Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes
Current Biology 20(6):506-512, 2010
(Abstract on journal homepage)
Martin Peifer, Jonathan Weiss, Martin L. Sos, Mirjam Koker, Stefanie Heynck, Christian Netzer, Stefanie Fischer, Haridas Rode, Daniel Rauh, Jörg Rahnenführer, Roman K. Thomas
Analysis of compound synergy in high-throughput cellular screens by population-based lifetime modeling
PLoS One 5(1):e8919, 2010
Ilka Brigitte Petry, Esther Fieber, Marcus Schmidt, Mathias Gehrmann, Susanne Gebhard, Matthias Hermes, Wiebke Schormann, Silvia Selinski, Evgenia Freis, Holger Schwender, Marc Brulport, Katja Ickstadt, Jörg Rahnenführer, Lindsey Maccoux, Jonathan West, Heinz Kölbl, Martin Schuler, Jan Georg Hengstler
ERBB2 induces an antiapoptotic expression pattern of Bcl-2 family members in node-negative breast cancer
Clinical Cancer Research 16(2):451-460, 2010
(Abstract on journal homepage)
2009
Marco Grzegorczyk, Dirk Husmeier
Non-stationary continuous dynamic Bayesian networks
In Bengio, Schuurmans, Lafferty, Williams and Culotta (editors) Proceedings of the Twenty-Third Annual Conference on Neural Information Processing Systems (NIPS 2009), Curran Associates, ISBN 9781605603520, 682-690, 2009
Marco Grzegorczyk, Dirk Husmeier
Avoiding Spurious Feedback Loops in the Reconstruction of Gene Regulatory Networks with Dynamic Bayesian Networks
In: V. Kadirkamanathan et al. (eds.): Pattern Recognition in Bioinformatics, Lecture Notes in Bioinformatics, Springer-Verlag Berlin Heidelberg, 113-124, 2009
Evgenia Freis, Silvia Selinski, Birte Weibert, Ulrike Krahn, Marcus Schmidt, Mathias Gehrmann, Matthias Hermes, Lindsey Maccoux, Jonathan West, Holger Schwender, Jörg Rahnenführer, Jan G. Hengstler, Katja Ickstadt
Effects of metagene calculation on survival: An integrative approach using cluster and promoter analysis
Proceedings of the Sixth International Workshop on Computational Systems Biology (WCSB 2009), p. 47-50, Aarhus, June 10-12, 2009
(Free Conference Proceedings)
Marco Grzegorczyk, Dirk Husmeier
Modelling non-stationary gene regulatory processes with a non-homogeneous dynamic Bayesian network and the change point process
Proceedings of the Sixth International Workshop on Computational Systems Biology (WCSB 2009), p. 51-54, Aarhus, June 10-12, 2009
(Free Conference Proceedings)
Martin L. Sos, Kathrin Michel, Thomas Zander, Jonathan Weiss, Peter Frommolt, Martin Peifer, Danan Li, Roland Ullrich, Mirjam Koker, Florian Fischer, Takeshi Shimamura, Daniel Rauh, Craig Mermel, Stefanie Fischer, Isabel Stückrath, Stefanie Heynck, Rameen Beroukhim, William Lin, Wendy Winckler, Kinjal Shah, Thomas LaFramboise, Whei F. Moriarty, Megan Hanna, Laura Tolosi, Jörg Rahnenführer, Roel Verhaak, Derek Chiang, Gad Getz, Martin Hellmich, Jürgen Wolf, Luc Girard, Michael Peyton, Barbara A. Weir, Tzu-Hsiu Chen, Heidi Greulich, Jordi Barretina, Geoffrey I. Shapiro, Levi A. Garraway, Adi F. Gazdar, John D. Minna, Matthew Meyerson, Kwok-Kin Wong, Roman K. Thomas
Predicting drug susceptibility of non–small cell lung cancers based on genetic lesions
Journal of Clinical Investigation, 119(6): 1727-1740, 2009
(Full free text on journal homepage)
Silke Wemmert, Marc Bettscheider, Simone Alt, Ralf Ketter, Kai Kammers, Wolfgang Feiden, Wolf-Ingo Steudel, Jörg Rahnenführer, Steffi Urbschat
p15 promotor methylation - A novel prognostic marker in glioblastoma patients
International Journal of Oncology 34(6):1743-1748, 2009
(Abstract on journal homepage)
Katharina Podwojski, Arno Fritsch, Daniel C. Chamrad, Wolfgang Paul, Barbara Sitek, Kai Stühler, Petra Mutzel, Christian Stephan, Helmut E. Meyer, Wolfgang Urfer, Katja Ickstadt, Jörg Rahnenführer
Retention Time Alignment Algorithms for LC/MS Data must consider Nonlinear Shifts
Bioinformatics 25(6):758-764, 2009
(Abstract at journal homepage, Link to supplementary material)
2008
Holger Schwender, Katja Ickstadt, Jörg Rahnenführer
Classification with High-Dimensional Genetic Data: Assigning Patients and Genetic Features to Known Classes
Biometrical Journal 50(6): 911-926, 2008
(Abstract at journal homepage)
Jörg Rahnenführer
Locally optimal tests of independence for Archimedean copula families
In: B.Schipp, W. Krämer (Eds.): Festschrift in Honour of Götz Trenkler: Statistical Inference, Econometric Analysis and Matrix Algebra, 103-112, 2008
Jasmina Bogojeska, Adrian Alexa, André Altmann, Thomas Lengauer, Jörg Rahnenführer
Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores
Bioinformatics 24(20): 2391-2392, 2008
(Full free text on journal homepage)
Katharina Podwojski, Arno Fritsch, Daniel Chamrad, Wolfgang Paul, Petra Mutzel, Katja Ickstadt, Jörg Rahnenführer
A retention-time alignment algorithm for LC/MS data
Proceedings of the Fifth International Workshop on Computational Systems Biology (WCSB 2008), p. 129-132, Leipzig, June 11-13, 2008
(Free Conference Proceedings)
Jasmina Bogojeska, Thomas Lengauer, Jörg Rahnenführer
Stability Analysis of Mixtures of Mutagenetic Trees
BMC Bioinformatics 9: 165, 2008
(Full free text on BioMed Central)
Max Hornstein, Michele J. Hoffmann, Adrian Alexa, Masanori Yamanaka, Mirko Müller, Volker Jung, Jörg Rahnenführer, Wolfgang A. Schulz
Protein phosphatase and TRAIL receptor genes as new candidate tumor genes on chromosome 8p in prostate cancer
Cancer Genomics Proteomics 5(2): 123-136, 2008
Ralf Ketter, Jörg Rahnenführer, Wolfram Henn, Yoo-Jin Kim, Wolfgang Feiden, Wolf-Ingo Steudel, Klaus D. Zang, Steffi Urbschat
Correspondence of tumor localization with tumor recurrence and cytogenetic progression in meningiomas
Neurosurgery 62(1): 61-70, 2008
(Abstract at journal homepage)
2007
Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
Conformational analysis of alternative protein structures
Bioinformatics 23(23): 3131-3138, 2007
(Abstract at journal homepage)
Jörn Kamradt, Volker Jung, Kerstin Wahrheit, Laura Tolosi, Jörg Rahnenführer, Martin Schilling, Robert Walker, Sean Davis, Michael Stöckle, Paul Meltzer, Bernd Wullich
Detection of Novel Amplicons in Prostate Cancer by Comprehensive Genomic Profiling of Prostate Cancer Cell Lines Using Oligonucleotide-Based ArrayCGH
PLoS ONE 2(8): e769, 2007
(Full free text on journal homepage)
Ralf Ketter, Steffi Urbschat, Wolfram Henn, Wolfgang Feiden, Niko Beerenwinkel, Thomas Lengauer, Wolf-Ingo Steudel, Klaus D. Zang, Jörg Rahnenführer
Application of oncogenetic trees mixtures as a biostatistical model of the clonal cytogenetic evolution of meningiomas
International Journal of Cancer 121(7): 1473-1480, 2007
(Abstract at journal homepage)
Andreas Schlicker, Jörg Rahnenführer, Mario Albrecht, Thomas Lengauer T, Francisco S. Domingues
GOTax: investigating biological processes and biochemical activities along the taxonomic tree
Genome Biology 8(3): R33, 2007
(Full tree text on journal homepage)
Wolfgang A. Schulz, Adrian Alexa, Volker Jung, Christiane Hader, Michele J. Hoffmann, Masanori Yamanaka, Sandy Fritzsche, Agnes Wlazlinski, Mirko Müller, Thomas Lengauer, Rainer Engers, Andrea R. Florl, Bernd Wullich, Jörg Rahnenführer
Factor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer
Molecular Cancer 6: 14, 2007
(Full free text on journal homepage)
Ralf Ketter, Yoo-Jin Kim, Simone Storck, Jörg Rahnenführer, Bernd F.M. Romeike, Wolf-Ingo Steudel, Klaus D. Zang, Wolfram Henn
Hyperdiploidy defines a distinct cytogenetic entity of meningiomas
Journal of Neuro-Oncology 83(2): 213-221, Epub 2007 Jan 17, 2007
(Abstract at journal homepage)
2006
Junming Yin, Niko Beerenwinkel, Jörg Rahnenführer, Thomas Lengauer
Model selection for mixtures of mutagenetic trees
Statistical Applications in Genetics and Molecular Biology 5, No.1, Article 17, 2006
(Abstract at journal homepage)
Andreas Schlicker, Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
A new Measure for functional Similarity of Gene Products based on Gene Ontology
BMC Bioinformatics 7: 302, 2006
(Full free text on BioMed Central)
Adrian Alexa, Jörg Rahnenführer, Thomas Lengauer
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
Bioinformatics 22(13): 1600-1607, 2006
(Abstract at journal homepage)
2005
Silke Wemmert, Ralf Ketter, Jörg Rahnenführer, Martin Strowitzki, Wolfgang Feiden, Christian Hartmann, Thomas Lengauer, Florian Stockhammer, Klaus D. Zang, Eckart Meese, Wolf-Ingo Steudel, Andreas von Deimling, Steffi Urbschat
Patients with high grade gliomas harboring deletions of chromosomes 9p and 10q benefit from temozolomide treatment
Neoplasia 7(10): 883-893, 2005
(Abstract at PubMed)
Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer
Computational methods for the design of effective therapies against drug resistant HIV strains
Bioinformatics 21(21): 3943-3950, 2005
(Abstract at journal homepage)
Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
Learning multiple evolutionary pathways from cross-sectional data
Journal of Computational Biology 12(6): 584-598, 2005
(Abstract at journal homepage)
Jörg Rahnenführer
Clustering algorithms and other exploratory methods for microarray data analysis
Methods of Information in Medicine 44(3): 444-448, 2005
(Abstract at journal homepage)
Jörg Rahnenführer
Image analysis for cDNA microarrays
Methods of Information in Medicine 44(3): 405-407, 2005
(Abstract at journal homepage)
Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, Thomas Lengauer
Estimating cancer survival and clinical outcome based on genetic tumor progression scores
Bioinformatics 21(10): 2438-2446, 2005
(Abstract at journal homepage)
Andreas Hahn, Jörg Rahnenführer, Priti Talwar, Thomas Lengauer
Confirmation of human protein interaction data by human expression data
BMC Bioinformatics 6: 112, 2005
(Full free text on BioMed Central)
Niko Beerenwinkel, Martin Däumer, Tobias Sing, Jörg Rahnenführer, Thomas Lengauer, Joachim Selbig, Daniel Hoffmann, Rolf Kaiser
Estimating HIV evolutionary pathways and the genetic barrier to drug resistance
The Journal of Infectious Diseases 191(11): 1953-1960, 2005
(Abstract at PubMed)
Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer
Mtreemix: a software package for learning and using mixture models of mutagenetic trees
Bioinformatics 21(9): 2106-2107, 2005
(Abstract at journal homepage)
Ani V. Das, Jackson James, Jörg Rahnenführer, Wallace B. Thoresona, Sumitra Bhattacharyaa, Xing Zhao, Iqbal Ahmad
Retinal properties and potential of the adult mammalian ciliary epithelium stem cells
Vision Research 45(13):1653-1666, 2005
(Abstract at PubMed)
2004
Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
Automated clustering of ensembles of alternative models in protein structure databases
PEDS (Protein Engineering, Design and Selection) 17(6): 537-543, 2004
(Abstract at journal homepage)
Jörg Rahnenführer, Francisco S. Domingues, Jochen Maydt, Thomas Lengauer
Calculating the statistical significance of changes in pathway activity from gene expression data
Statistical Applications in Genetics and Molecular Biology 3, No.1, Article 16, 2004
(Abstract at journal homepage)
Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Jochen Selbig, Thomas Lengauer
Learning multiple evolutionary pathways from cross-sectional data
Proc. 8th Ann. Int. Conf. on Res. in Comput. Biol. (RECOMB '04), San Diego, March 27-31, 2004
(Abstract)
Jackson James, Ani V. Das, Jörg Rahnenführer, Iqbal Ahmad
Cellular and molecular characterization of early and late retinal stem cells/progenitors: differential regulation of proliferation and context dependent role of Notch signaling
Journal of Neurobiology 61(3): 359-376, 2004
(Abstract at PubMed)
Ani V. Das, Jackson James, Xing Zhao, Jörg Rahnenführer, Iqbal Ahmad
Identification of c-Kit receptor as a regulator of adult neural stem cells in the mammalian eye: interactions with Notch signaling
Developmental Biology 273(1): 87-105, 2004
(Abstract at PubMed)
Jörg Rahnenführer, Daniel Bozinov
Hybrid clustering for microarray image analysis combining intensity and shape features
BMC Bioinformatics 5: 47, 2004
Ingolf Sommer, Jörg Rahnenführer, Francisco S. Domingues, Ulrik de Lichtenberg, Thomas Lengauer
Predicting protein structure classes from function predictions
Bioinformatics 20(5): 770-776, 2004
2003
Jörg Rahnenführer, Andreas Futschik
Cost-effective screening for differentially expressed genes in microarray experiments based on normal mixtures
Austrian Journal of Statistics 32, No.3, 225-238, 2003
(Free pdf-file at journal homepage)
Jörg Rahnenführer
On preferences of general two-sided tests with applications to Kolmogorov-Smirnov-type tests
Statistics and Decisions 21, No.2, 115-136, 2003
(Abstract at journal homepage)
2002
Jörg Rahnenführer
Efficient Clustering Methods for Tumor Classification with Microarrays
Proceedings of 26th Annual Conference of the Gesellschaft für Klassifikation, Mannheim, Germany, July 22-24, 2002
In: Between Data Science and Applied Data Analysis (Eds: M. Schader, W. Gaul, M. Vichi), Springer, 670-679, 2003.
(Table of Contents)
Daniel Bozinov, Jörg Rahnenführer, Cathy Burson, Ofer Spiegelstein
Automated Grid Alignment for High-Throughput Analysis of Microarray Images
Proceedings of The 2002 International Conference on Imaging Science, Systems, and Technology (CISST'02), Las Vegas, June 24-27, 2002
Eds: H.R. Arabnia, Y. Mun, CSREA Press, ISBN 1-892512-95-5
Arnold Janssen, Jörg Rahnenführer
A hazard based approach to dependence tests for bivariate censored models
Mathematical Methods of Statistics 11, No.3, 297-322, 2002
(Journal homepage)
Daniel Bozinov, Jörg Rahnenführer
Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering
Bioinformatics 18(5): 747-756, 2002
Jörg Rahnenführer
Multivariate permutation tests for the k-sample problem with clustered data
Computational Statistics 17, No.2, 165-184, 2002
(Report Series 35, SFB 010, Vienna University of Economics and Business Administration, Statistical Institute)
(Journal homepage)
2001
Jörg Rahnenführer
Statistical Inference for Clustering Microarrays
Proceedings of MSRI Workshop: Nonlinear Estimation and Classification, Berkeley, March 19-29, 2001
In: Lectures Notes in Statistics 171 (Eds: D.D. Denison, M.H. Hansen, C.C. Holmes, B. Mallick and B. Yu), Springer, 323-332, 2003.
(Book homepage)